13 Weight [Pups & Teens]
❖ Data
❖ Description
Variable | Description |
---|---|
Mouse |
Mouse unique identifier |
Condition |
Hypoxia condition: Normoxia (N) vs Intermittent Hypoxia (IH) |
Stage |
Developmental stage |
Weight_Gain |
Weight gain between two successive stages (starting at P2) (g) |
Variable | Description |
---|---|
Mouse |
Mouse unique identifier |
Condition |
Hypoxia condition: Normoxia (N) vs Intermittent Hypoxia (IH) |
Stage |
Developmental stage |
Weight_Gain |
Weight gain between two successive stages (starting at P2) (g) |
❖ Correlations
13.1 Weight evolution in time (Pups & Teens)
13.1.1 Data Exploration
❖ Distribution:
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 0.427 | 0.055 | 0.003 | 0.129 | 0.1 | 0.3 | 0.5 | 0.109 | −0.264 | 22 |
IH | 0.2 | 0.059 | 0.004 | 0.297 | 0 | 0.1 | 0.3 | 0 | 0.425 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 0.427 | 0.055 | 0.003 | 0.129 | 0.1 | 0.3 | 0.5 | 0.109 | −0.264 | 22 |
IH | 0.2 | 0.059 | 0.004 | 0.297 | 0 | 0.1 | 0.3 | 0 | 0.425 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 0.964 | 0.114 | 0.013 | 0.118 | 0.125 | 0.7 | 1.1 | −0.908 | 0.907 | 22 |
IH | 0.394 | 0.064 | 0.004 | 0.162 | 0.025 | 0.3 | 0.5 | 0.041 | −0.143 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 0.964 | 0.114 | 0.013 | 0.118 | 0.125 | 0.7 | 1.1 | −0.908 | 0.907 | 22 |
IH | 0.394 | 0.064 | 0.004 | 0.162 | 0.025 | 0.3 | 0.5 | 0.041 | −0.143 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 1.455 | 0.202 | 0.041 | 0.139 | 0.25 | 0.9 | 1.7 | −0.953 | 1.525 | 22 |
IH | 0.622 | 0.111 | 0.012 | 0.179 | 0.1 | 0.4 | 0.8 | −0.204 | 0.709 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 1.455 | 0.202 | 0.041 | 0.139 | 0.25 | 0.9 | 1.7 | −0.953 | 1.525 | 22 |
IH | 0.622 | 0.111 | 0.012 | 0.179 | 0.1 | 0.4 | 0.8 | −0.204 | 0.709 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 2.032 | 0.208 | 0.043 | 0.102 | 0.325 | 1.7 | 2.4 | 0.196 | −1.341 | 22 |
IH | 0.867 | 0.157 | 0.025 | 0.181 | 0.225 | 0.7 | 1.2 | 0.829 | −0.527 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 2.032 | 0.208 | 0.043 | 0.102 | 0.325 | 1.7 | 2.4 | 0.196 | −1.341 | 22 |
IH | 0.867 | 0.157 | 0.025 | 0.181 | 0.225 | 0.7 | 1.2 | 0.829 | −0.527 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 2.586 | 0.236 | 0.056 | 0.091 | 0.3 | 2.1 | 3.1 | 0.203 | 0.072 | 22 |
IH | 1.15 | 0.195 | 0.038 | 0.169 | 0.325 | 0.9 | 1.5 | 0.591 | −0.636 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 2.586 | 0.236 | 0.056 | 0.091 | 0.3 | 2.1 | 3.1 | 0.203 | 0.072 | 22 |
IH | 1.15 | 0.195 | 0.038 | 0.169 | 0.325 | 0.9 | 1.5 | 0.591 | −0.636 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.036 | 0.313 | 0.098 | 0.103 | 0.325 | 2.3 | 3.6 | −0.197 | 0.433 | 22 |
IH | 1.372 | 0.263 | 0.069 | 0.192 | 0.325 | 0.9 | 1.8 | 0.1 | −0.441 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.036 | 0.313 | 0.098 | 0.103 | 0.325 | 2.3 | 3.6 | −0.197 | 0.433 | 22 |
IH | 1.372 | 0.263 | 0.069 | 0.192 | 0.325 | 0.9 | 1.8 | 0.1 | −0.441 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.409 | 0.385 | 0.148 | 0.113 | 0.525 | 2.7 | 4.3 | 0.545 | 0.127 | 22 |
IH | 1.617 | 0.3 | 0.09 | 0.185 | 0.5 | 1 | 2.1 | 0.026 | −0.337 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.409 | 0.385 | 0.148 | 0.113 | 0.525 | 2.7 | 4.3 | 0.545 | 0.127 | 22 |
IH | 1.617 | 0.3 | 0.09 | 0.185 | 0.5 | 1 | 2.1 | 0.026 | −0.337 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.677 | 0.529 | 0.28 | 0.144 | 0.8 | 3 | 4.7 | 0.632 | −0.929 | 22 |
IH | 1.789 | 0.312 | 0.098 | 0.175 | 0.5 | 1.3 | 2.3 | 0.194 | −0.755 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.677 | 0.529 | 0.28 | 0.144 | 0.8 | 3 | 4.7 | 0.632 | −0.929 | 22 |
IH | 1.789 | 0.312 | 0.098 | 0.175 | 0.5 | 1.3 | 2.3 | 0.194 | −0.755 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.868 | 0.618 | 0.382 | 0.16 | 1.125 | 3.2 | 5.1 | 0.646 | −1.152 | 22 |
IH | 1.983 | 0.405 | 0.164 | 0.204 | 0.625 | 1.4 | 2.6 | 0.37 | −1.015 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 3.868 | 0.618 | 0.382 | 0.16 | 1.125 | 3.2 | 5.1 | 0.646 | −1.152 | 22 |
IH | 1.983 | 0.405 | 0.164 | 0.204 | 0.625 | 1.4 | 2.6 | 0.37 | −1.015 | 18 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 6.05 | 0.129 | 0.017 | 0.021 | 0.25 | 5.9 | 6.2 | 0 | −1.2 | 4 |
IH | 4.467 | 0.651 | 0.423 | 0.146 | 1.3 | 3.8 | 5.1 | −0.23 | −1.5 | 3 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 6.05 | 0.129 | 0.017 | 0.021 | 0.25 | 5.9 | 6.2 | 0 | −1.2 | 4 |
IH | 4.467 | 0.651 | 0.423 | 0.146 | 1.3 | 3.8 | 5.1 | −0.23 | −1.5 | 3 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 6.7 | 0.455 | 0.207 | 0.068 | 0.85 | 6.1 | 7.1 | −0.894 | −0.748 | 4 |
IH | 5.233 | 0.153 | 0.023 | 0.029 | 0.3 | 5.1 | 5.4 | 0.935 | −1.5 | 3 |
Condition | Mean | SD | Variance | CoV | IQR | Min | Max | Skewness | Kurtosis | n |
---|---|---|---|---|---|---|---|---|---|---|
N | 6.7 | 0.455 | 0.207 | 0.068 | 0.85 | 6.1 | 7.1 | −0.894 | −0.748 | 4 |
IH | 5.233 | 0.153 | 0.023 | 0.029 | 0.3 | 5.1 | 5.4 | 0.935 | −1.5 | 3 |
❖ Evolution:
13.1.2 Models & Diagnostics
Exploring some Generalized Linear (Mixed) model candidates:
❖ Model call:
```{r}
glmmTMB(formula = Weight_Gain ~ Condition * Stage + ar1(Stage +
0 | Mouse), data = data, family = Gamma("log"), REML = TRUE,
ziformula = ~0, dispformula = ~1)
```
❖ Performance:
performance::performance(mod)
AIC | AICc | BIC | R2_conditional | R2_marginal | ICC | RMSE | Sigma |
---|---|---|---|---|---|---|---|
-266.52 | -262.78 | -168.41 | 1.00 | 1.00 | 0 | 0.05 | 0.05 |
AIC | AICc | BIC | R2_conditional | R2_marginal | ICC | RMSE | Sigma |
---|---|---|---|---|---|---|---|
-266.52 | -262.78 | -168.41 | 1.00 | 1.00 | 0 | 0.05 | 0.05 |
❖ Residuals:
performance::check_model(
mod, panel = FALSE,
check = c("pp_check", "qq", "reqq", "linearity", "homogeneity")
)
❖ Predictions:
Simulating data from the model for pseudo “Posterior Predictive” plots.
♦ Simulated data vs observed data:
♦ Simulated statistics vs observed ones:
❖ Potential outliers:
13.1.3 Effects Analysis
13.1.3.1 Coefficients
❖ All effects (Wald):
parameters::parameters(
mod, component = "conditional", effects = "fixed",
exponentiate = should_exp(mod), p_adjust = "none", summary = TRUE, digits = 3
)
Parameter | Coefficient | SE | 95% CI | z | p |
---|---|---|---|---|---|
(Intercept) | 1.746 | 0.045 | (1.66, 1.84) | 21.616 | < .001 |
Condition1 | 1.417 | 0.037 | (1.35, 1.49) | 13.515 | < .001 |
Stage1 | 0.163 | 0.003 | (0.16, 0.17) | -103.160 | < .001 |
Stage2 | 0.350 | 0.006 | (0.34, 0.36) | -65.651 | < .001 |
Stage3 | 0.538 | 0.008 | (0.52, 0.55) | -42.298 | < .001 |
Stage4 | 0.753 | 0.010 | (0.73, 0.77) | -20.803 | < .001 |
Stage5 | 0.980 | 0.013 | (0.96, 1.00) | -1.579 | 0.114 |
Stage6 | 1.156 | 0.015 | (1.13, 1.19) | 11.395 | < .001 |
Stage7 | 1.330 | 0.017 | (1.30, 1.36) | 22.000 | < .001 |
Stage8 | 1.452 | 0.020 | (1.41, 1.49) | 27.381 | < .001 |
Stage9 | 1.562 | 0.023 | (1.52, 1.61) | 30.450 | < .001 |
Stage10 | 3.338 | 0.099 | (3.15, 3.54) | 40.657 | < .001 |
Condition1 * Stage1 | 1.051 | 0.018 | (1.02, 1.09) | 2.845 | 0.004 ** |
Condition1 * Stage2 | 1.106 | 0.018 | (1.07, 1.14) | 6.284 | < .001 |
Condition1 * Stage3 | 1.082 | 0.016 | (1.05, 1.11) | 5.406 | < .001 |
Condition1 * Stage4 | 1.086 | 0.015 | (1.06, 1.11) | 6.040 | < .001 |
Condition1 * Stage5 | 1.063 | 0.014 | (1.04, 1.09) | 4.746 | < .001 |
Condition1 * Stage6 | 1.057 | 0.013 | (1.03, 1.08) | 4.332 | < .001 |
Condition1 * Stage7 | 1.030 | 0.013 | (1.00, 1.06) | 2.318 | 0.020 * |
Condition1 * Stage8 | 1.015 | 0.014 | (0.99, 1.04) | 1.064 | 0.287 |
Condition1 * Stage9 | 0.990 | 0.014 | (0.96, 1.02) | -0.708 | 0.479 |
Condition1 * Stage10 | 0.806 | 0.024 | (0.76, 0.85) | -7.300 | < .001 |
Model: Weight_Gain ~ Condition * Stage (374 Observations) |
Parameter | Coefficient | SE | 95% CI | z | p |
---|---|---|---|---|---|
(Intercept) | 1.746 | 0.045 | (1.66, 1.84) | 21.616 | < .001 |
Condition1 | 1.417 | 0.037 | (1.35, 1.49) | 13.515 | < .001 |
Stage1 | 0.163 | 0.003 | (0.16, 0.17) | -103.160 | < .001 |
Stage2 | 0.350 | 0.006 | (0.34, 0.36) | -65.651 | < .001 |
Stage3 | 0.538 | 0.008 | (0.52, 0.55) | -42.298 | < .001 |
Stage4 | 0.753 | 0.010 | (0.73, 0.77) | -20.803 | < .001 |
Stage5 | 0.980 | 0.013 | (0.96, 1.00) | -1.579 | 0.114 |
Stage6 | 1.156 | 0.015 | (1.13, 1.19) | 11.395 | < .001 |
Stage7 | 1.330 | 0.017 | (1.30, 1.36) | 22.000 | < .001 |
Stage8 | 1.452 | 0.020 | (1.41, 1.49) | 27.381 | < .001 |
Stage9 | 1.562 | 0.023 | (1.52, 1.61) | 30.450 | < .001 |
Stage10 | 3.338 | 0.099 | (3.15, 3.54) | 40.657 | < .001 |
Condition1 * Stage1 | 1.051 | 0.018 | (1.02, 1.09) | 2.845 | 0.004 ** |
Condition1 * Stage2 | 1.106 | 0.018 | (1.07, 1.14) | 6.284 | < .001 |
Condition1 * Stage3 | 1.082 | 0.016 | (1.05, 1.11) | 5.406 | < .001 |
Condition1 * Stage4 | 1.086 | 0.015 | (1.06, 1.11) | 6.040 | < .001 |
Condition1 * Stage5 | 1.063 | 0.014 | (1.04, 1.09) | 4.746 | < .001 |
Condition1 * Stage6 | 1.057 | 0.013 | (1.03, 1.08) | 4.332 | < .001 |
Condition1 * Stage7 | 1.030 | 0.013 | (1.00, 1.06) | 2.318 | 0.020 * |
Condition1 * Stage8 | 1.015 | 0.014 | (0.99, 1.04) | 1.064 | 0.287 |
Condition1 * Stage9 | 0.990 | 0.014 | (0.96, 1.02) | -0.708 | 0.479 |
Condition1 * Stage10 | 0.806 | 0.024 | (0.76, 0.85) | -7.300 | < .001 |
Model: Weight_Gain ~ Condition * Stage (374 Observations) |
❖ Main effects (Wald Chi-Square):
car::Anova(mod, type = 3)
term | statistic | df | p.value |
---|---|---|---|
Condition | 182.66 | 1 | <0.001 *** |
Stage | 10730.80 | 10 | <0.001 *** |
Condition:Stage | 87.92 | 10 | <0.001 *** |
term | statistic | df | p.value |
---|---|---|---|
Condition | 182.66 | 1 | <0.001 *** |
Stage | 10730.80 | 10 | <0.001 *** |
Condition:Stage | 87.92 | 10 | <0.001 *** |
❖ Main effects (Likelihood Ratio Test):
LRT(mod, pred = "Condition")
model | df | aic | bic | log_lik | deviance | chisq | chi_df | pr_chisq |
---|---|---|---|---|---|---|---|---|
mod_reduced | 14 | -291.60 | -236.67 | 159.80 | -319.60 | |||
mod_full | 25 | -415.64 | -317.54 | 232.82 | -465.64 | 146.04 | 11 | <0.001 *** |
model | df | aic | bic | log_lik | deviance | chisq | chi_df | pr_chisq |
---|---|---|---|---|---|---|---|---|
mod_reduced | 14 | -291.60 | -236.67 | 159.80 | -319.60 | |||
mod_full | 25 | -415.64 | -317.54 | 232.82 | -465.64 | 146.04 | 11 | <0.001 *** |
13.1.3.2 Marginal Effects
Marginal means & Contrasts for each predictor:
❖ Marginal Means:
emmeans(mod, specs = pred, type = "response")
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 2.473 | 0.085 | 371 | 2.311 | 2.647 |
IH | 1.232 | 0.047 | 371 | 1.143 | 1.329 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 2.473 | 0.085 | 371 | 2.311 | 2.647 |
IH | 1.232 | 0.047 | 371 | 1.143 | 1.329 |
- Results are averaged over the levels of: Stage
- Confidence level used: 0.95
- Intervals are back-transformed from the log scale
❖ Contrasts:
emmeans(mod, specs = pred, type = "response") |>
contrast(method = "consec", adjust = "none", infer = TRUE)
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
IH / N | 0.498 | 0.026 | 371 | 0.45 | 0.551 | 1 | −13.515 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
IH / N | 0.498 | 0.026 | 371 | 0.45 | 0.551 | 1 | −13.515 | <0.001 *** |
- Results are averaged over the levels of: Stage
- Confidence level used: 0.95
- Intervals are back-transformed from the log scale
- Tests are performed on the log scale
❖ Boxplot:
❖ Marginal Means:
emmeans(mod, specs = pred, type = "response")
Stage | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
P3 | 0.285 | 0.008 | 371 | 0.269 | 0.301 |
P4 | 0.611 | 0.018 | 371 | 0.577 | 0.647 |
P5 | 0.939 | 0.027 | 371 | 0.888 | 0.994 |
P6 | 1.315 | 0.038 | 371 | 1.242 | 1.392 |
P7 | 1.71 | 0.049 | 371 | 1.616 | 1.81 |
P8 | 2.018 | 0.058 | 371 | 1.907 | 2.136 |
P9 | 2.322 | 0.067 | 371 | 2.194 | 2.457 |
P10 | 2.534 | 0.073 | 371 | 2.395 | 2.682 |
P11 | 2.727 | 0.079 | 371 | 2.577 | 2.887 |
P16 | 5.828 | 0.241 | 371 | 5.372 | 6.322 |
P21 | 6.613 | 0.299 | 371 | 6.049 | 7.229 |
Stage | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
P3 | 0.285 | 0.008 | 371 | 0.269 | 0.301 |
P4 | 0.611 | 0.018 | 371 | 0.577 | 0.647 |
P5 | 0.939 | 0.027 | 371 | 0.888 | 0.994 |
P6 | 1.315 | 0.038 | 371 | 1.242 | 1.392 |
P7 | 1.71 | 0.049 | 371 | 1.616 | 1.81 |
P8 | 2.018 | 0.058 | 371 | 1.907 | 2.136 |
P9 | 2.322 | 0.067 | 371 | 2.194 | 2.457 |
P10 | 2.534 | 0.073 | 371 | 2.395 | 2.682 |
P11 | 2.727 | 0.079 | 371 | 2.577 | 2.887 |
P16 | 5.828 | 0.241 | 371 | 5.372 | 6.322 |
P21 | 6.613 | 0.299 | 371 | 6.049 | 7.229 |
- Results are averaged over the levels of: Condition
- Confidence level used: 0.95
- Intervals are back-transformed from the log scale
❖ Contrasts:
emmeans(mod, specs = pred, type = "response") |>
contrast(method = "consec", adjust = "none", infer = TRUE)
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
P4 / P3 | 2.146 | 0.031 | 371 | 2.086 | 2.209 | 1 | 52.523 | <0.001 *** |
P5 / P4 | 1.537 | 0.022 | 371 | 1.494 | 1.582 | 1 | 29.589 | <0.001 *** |
P6 / P5 | 1.4 | 0.02 | 371 | 1.36 | 1.44 | 1 | 23.147 | <0.001 *** |
P7 / P6 | 1.301 | 0.019 | 371 | 1.264 | 1.338 | 1 | 18.091 | <0.001 *** |
P8 / P7 | 1.18 | 0.017 | 371 | 1.147 | 1.214 | 1 | 11.397 | <0.001 *** |
P9 / P8 | 1.15 | 0.017 | 371 | 1.118 | 1.184 | 1 | 9.637 | <0.001 *** |
P10 / P9 | 1.092 | 0.016 | 371 | 1.061 | 1.123 | 1 | 6.038 | <0.001 *** |
P11 / P10 | 1.076 | 0.016 | 371 | 1.046 | 1.107 | 1 | 5.052 | <0.001 *** |
P16 / P11 | 2.137 | 0.071 | 371 | 2.002 | 2.28 | 1 | 22.931 | <0.001 *** |
P21 / P16 | 1.135 | 0.04 | 371 | 1.06 | 1.215 | 1 | 3.629 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
P4 / P3 | 2.146 | 0.031 | 371 | 2.086 | 2.209 | 1 | 52.523 | <0.001 *** |
P5 / P4 | 1.537 | 0.022 | 371 | 1.494 | 1.582 | 1 | 29.589 | <0.001 *** |
P6 / P5 | 1.4 | 0.02 | 371 | 1.36 | 1.44 | 1 | 23.147 | <0.001 *** |
P7 / P6 | 1.301 | 0.019 | 371 | 1.264 | 1.338 | 1 | 18.091 | <0.001 *** |
P8 / P7 | 1.18 | 0.017 | 371 | 1.147 | 1.214 | 1 | 11.397 | <0.001 *** |
P9 / P8 | 1.15 | 0.017 | 371 | 1.118 | 1.184 | 1 | 9.637 | <0.001 *** |
P10 / P9 | 1.092 | 0.016 | 371 | 1.061 | 1.123 | 1 | 6.038 | <0.001 *** |
P11 / P10 | 1.076 | 0.016 | 371 | 1.046 | 1.107 | 1 | 5.052 | <0.001 *** |
P16 / P11 | 2.137 | 0.071 | 371 | 2.002 | 2.28 | 1 | 22.931 | <0.001 *** |
P21 / P16 | 1.135 | 0.04 | 371 | 1.06 | 1.215 | 1 | 3.629 | <0.001 *** |
- Results are averaged over the levels of: Condition
- Confidence level used: 0.95
- Intervals are back-transformed from the log scale
- Tests are performed on the log scale
❖ Boxplot:
❖ Marginal Means:
emmeans(mod, specs = emmeans_formula, type = "response")
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 0.424 | 0.016 | 371 | 0.393 | 0.458 |
IH | 0.191 | 0.008 | 371 | 0.176 | 0.208 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 0.424 | 0.016 | 371 | 0.393 | 0.458 |
IH | 0.191 | 0.008 | 371 | 0.176 | 0.208 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 0.957 | 0.037 | 371 | 0.887 | 1.033 |
IH | 0.39 | 0.017 | 371 | 0.359 | 0.424 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 0.957 | 0.037 | 371 | 0.887 | 1.033 |
IH | 0.39 | 0.017 | 371 | 0.359 | 0.424 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 1.44 | 0.056 | 371 | 1.335 | 1.554 |
IH | 0.613 | 0.026 | 371 | 0.563 | 0.666 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 1.44 | 0.056 | 371 | 1.335 | 1.554 |
IH | 0.613 | 0.026 | 371 | 0.563 | 0.666 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 2.022 | 0.078 | 371 | 1.874 | 2.182 |
IH | 0.855 | 0.037 | 371 | 0.786 | 0.93 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 2.022 | 0.078 | 371 | 1.874 | 2.182 |
IH | 0.855 | 0.037 | 371 | 0.786 | 0.93 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 2.577 | 0.1 | 371 | 2.388 | 2.78 |
IH | 1.135 | 0.049 | 371 | 1.044 | 1.235 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 2.577 | 0.1 | 371 | 2.388 | 2.78 |
IH | 1.135 | 0.049 | 371 | 1.044 | 1.235 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.021 | 0.117 | 371 | 2.8 | 3.26 |
IH | 1.348 | 0.058 | 371 | 1.239 | 1.467 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.021 | 0.117 | 371 | 2.8 | 3.26 |
IH | 1.348 | 0.058 | 371 | 1.239 | 1.467 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.389 | 0.131 | 371 | 3.141 | 3.657 |
IH | 1.59 | 0.068 | 371 | 1.462 | 1.73 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.389 | 0.131 | 371 | 3.141 | 3.657 |
IH | 1.59 | 0.068 | 371 | 1.462 | 1.73 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.643 | 0.141 | 371 | 3.376 | 3.931 |
IH | 1.763 | 0.075 | 371 | 1.621 | 1.918 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.643 | 0.141 | 371 | 3.376 | 3.931 |
IH | 1.763 | 0.075 | 371 | 1.621 | 1.918 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.824 | 0.148 | 371 | 3.544 | 4.126 |
IH | 1.945 | 0.083 | 371 | 1.788 | 2.116 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 3.824 | 0.148 | 371 | 3.544 | 4.126 |
IH | 1.945 | 0.083 | 371 | 1.788 | 2.116 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 6.655 | 0.364 | 371 | 5.976 | 7.411 |
IH | 5.103 | 0.317 | 371 | 4.517 | 5.765 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 6.655 | 0.364 | 371 | 5.976 | 7.411 |
IH | 5.103 | 0.317 | 371 | 4.517 | 5.765 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 7.319 | 0.436 | 371 | 6.509 | 8.23 |
IH | 5.975 | 0.406 | 371 | 5.227 | 6.829 |
Condition | response | SE | df | lower.CL | upper.CL |
---|---|---|---|---|---|
N | 7.319 | 0.436 | 371 | 6.509 | 8.23 |
IH | 5.975 | 0.406 | 371 | 5.227 | 6.829 |
- Confidence level used: 0.95
- Intervals are back-transformed from the log scale
❖ Contrasts:
emmeans(mod, specs = emmeans_formula, type = "response") |>
contrast(method = "pairwise", adjust = "none", infer = TRUE)
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.218 | 0.128 | 371 | 1.98 | 2.484 | 1 | 13.803 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.218 | 0.128 | 371 | 1.98 | 2.484 | 1 | 13.803 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.453 | 0.142 | 371 | 2.19 | 2.748 | 1 | 15.554 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.453 | 0.142 | 371 | 2.19 | 2.748 | 1 | 15.554 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.351 | 0.136 | 371 | 2.099 | 2.634 | 1 | 14.818 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.351 | 0.136 | 371 | 2.099 | 2.634 | 1 | 14.818 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.365 | 0.136 | 371 | 2.112 | 2.65 | 1 | 14.923 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.365 | 0.136 | 371 | 2.112 | 2.65 | 1 | 14.923 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.269 | 0.131 | 371 | 2.026 | 2.542 | 1 | 14.206 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.269 | 0.131 | 371 | 2.026 | 2.542 | 1 | 14.206 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.241 | 0.129 | 371 | 2.001 | 2.51 | 1 | 13.986 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.241 | 0.129 | 371 | 2.001 | 2.51 | 1 | 13.986 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.131 | 0.123 | 371 | 1.903 | 2.387 | 1 | 13.115 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.131 | 0.123 | 371 | 1.903 | 2.387 | 1 | 13.115 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.066 | 0.119 | 371 | 1.844 | 2.314 | 1 | 12.577 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 2.066 | 0.119 | 371 | 1.844 | 2.314 | 1 | 12.577 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 1.966 | 0.113 | 371 | 1.755 | 2.202 | 1 | 11.715 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 1.966 | 0.113 | 371 | 1.755 | 2.202 | 1 | 11.715 | <0.001 *** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 1.304 | 0.108 | 371 | 1.109 | 1.534 | 1 | 3.214 | 0.001 ** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 1.304 | 0.108 | 371 | 1.109 | 1.534 | 1 | 3.214 | 0.001 ** |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 1.225 | 0.111 | 371 | 1.026 | 1.463 | 1 | 2.247 | 0.025 * |
contrast | ratio | SE | df | lower.CL | upper.CL | null | t.ratio | p.value |
---|---|---|---|---|---|---|---|---|
N / IH | 1.225 | 0.111 | 371 | 1.026 | 1.463 | 1 | 2.247 | 0.025 * |
- Confidence level used: 0.95
- Intervals are back-transformed from the log scale
- Tests are performed on the log scale
❖ Temporal plot: